| # | Document title | Authors | Year | Source | Cited by |
| 1 | Exploring how structural and dynamic properties of bovine and canine serum albumins differ from human serum albumin | Ketrat S., Japrung D., Pongprayoon P. | 2020 | Journal of Molecular Graphics and Modelling,
98, 107601 | 97 |
| 2 | Graphene based aptasensor for glycated albumin in diabetes mellitus diagnosis and monitoring | Apiwat C., Luksirikul P., Kankla P., Pongprayoon P., Treerattrakoon K., Paiboonsukwong K., Fucharoen S., Dharakul T., Dharakul T., Japrung D. | 2016 | Biosensors and Bioelectronics,
82, pp. 140-145 | 92 |
| 3 | Simulations of anion transport through OprP reveal the molecular basis for high affinity and selectivity for phosphate | Pongprayoon P., Beckstein O., Wee C.L., Sansom M.S.P. | 2009 | Proceedings of the National Academy of Sciences of the United States of America,
106(51), pp. 21614-21618 | 60 |
| 4 | Probing the binding site characteristics of HSA: A combined molecular dynamics and cheminformatics investigation | Pongprayoon P., Gleeson M. | 2014 | Journal of Molecular Graphics and Modelling,
54, pp. 164-173 | 29 |
| 5 | Understanding the effects of two bound glucose in Sudlow site I on structure and function of human serum albumin: theoretical studies | Awang T., Wiriyatanakorn N., Saparpakorn P., Japrung D., Pongprayoon P. | 2017 | Journal of Biomolecular Structure and Dynamics,
35(4), pp. 781-790 | 27 |
| 6 | Structural insights into betaine aldehyde dehydrogenase (BADH2) from Oryza sativa explored by modeling and simulations | Baicharoen A., Vijayan R., Pongprayoon P. | 2018 | Scientific Reports,
8(1), 12892 | 23 |
| 7 | Sensitive detection of albuminuria by graphene oxide-mediated fluorescence quenching aptasensor | Chawjiraphan W., Apiwat C., Apiwat C., Segkhoonthod K., Treerattrakoon K., Pinpradup P., Sathirapongsasuti N., Pongprayoon P., Luksirikul P., Isarankura-Na-Ayudhya P., Japrung D. | 2020 | Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy,
231, 118128 | 22 |
| 8 | The critical role of dimer formation in monosaccharides binding to human serum albumin | Pongprayoon P., Mori T., Mori T. | 2018 | Physical Chemistry Chemical Physics,
20(5), pp. 3249-3257 | 21 |
| 9 | Exploring the interactions of a DNA aptamer with human serum albumins: simulation studies | Panman W., Japrung D., Pongprayoon P. | 2017 | Journal of Biomolecular Structure and Dynamics,
35(11), pp. 2328-2336 | 20 |
| 10 | Biomimetic design of a brush-like nanopore: Simulation studies | Pongprayoon P., Pongprayoon P., Beckstein O., Beckstein O., Sansom M.S.P. | 2012 | Journal of Physical Chemistry B,
116(1), pp. 462-468 | 20 |
| 11 | How human serum albumin-selective DNA aptamer binds to bovine and canine serum albumins | Kuntip N., Japrung D., Pongprayoon P. | 2021 | Biopolymers,
e23421 | 18 |
| 12 | Albuminuria detection using graphene oxide-mediated fluorescence quenching aptasensor | Chawjiraphan W., Apiwat C., Apiwat C., Segkhoonthod K., Treerattrakoon K., Treerattrakoon K., Pinpradup P., Sathirapongsasuti N., Pongprayoon P., Luksirikul P., Isarankura-Na-Ayudhya P., Japrung D. | 2020 | MethodsX,
7, 101114 | 14 |
| 13 | Revealing the Effects of Pore Size and Geometry on the Mechanical Properties of Graphene Nanopore Using the Atomistic Finite Element Method | Pongprayoon P., Chaimanatsakun A. | 2019 | Acta Mechanica Solida Sinica,
32(1), pp. 81-92 | 14 |
| 14 | The adsorption of glycated human serum albumin-selective aptamer onto a graphene sheet: simulation studies | Awang T., Thangsan P., Luksirikul P., Japrung D., Pongprayoon P. | 2019 | Molecular Simulation,
45(10), pp. 841-848 | 13 |
| 15 | Exploring the binding modes of cordycepin to human adenosine deaminase 1 (ADA1) compared to adenosine and 2’-deoxyadenosine | Niramitranon J., Pongprayoon P. | 2020 | Journal of Molecular Modeling,
26(2), 29 | 12 |
| 16 | The adsorption of human defensin 5 on bacterial membranes: simulation studies | Awang T., Pongprayoon P. | 2018 | Journal of Molecular Modeling,
24(10), 273 | 12 |
| 17 | Structural and Dynamic Alteration of Glycated Human Serum Albumin in Schiff Base and Amadori Adducts: A Molecular Simulation Study | Sittiwanichai S., Japrung D., Mori T., Pongprayoon P. | 2023 | Journal of Physical Chemistry B,
127(23), pp. 5230-5240 | 12 |
| 18 | Dynamics of human defensin 5 (HD5) self-assembly in solution: Molecular simulations/insights | Chairatana P., Niramitranon J., Pongprayoon P. | 2019 | Computational Biology and Chemistry,
83, 107091 | 11 |
| 19 | The penetration of human defensin 5 (HD5) through bacterial outer membrane: simulation studies | Awang T., Pongprayoon P. | 2021 | Journal of Molecular Modeling,
27(10), 291 | 11 |
| 20 | Revealing the structural dynamics of feline serum albumin | Pongprayoon P., Japrung D. | 2020 | Structural Chemistry | 9 |
| 21 | Why do the outer membrane proteins OmpF from E. coli and OprP from P. aeruginosa prefer trimer? Simulation studies | Niramitranon J., Sansom M.S., Pongprayoon P. | 2016 | Journal of Molecular Graphics and Modelling,
65, pp. 1-7 | 9 |
| 22 | Binding Modes of Carnostatine, Homocarnosine, and Ophidine to Human Carnosinase 1 | Toviwek B., Suwanasopee T., Koonawootrittriron S., Jattawa D., Pongprayoon P. | 2023 | ACS Omega | 8 |
| 23 | Binding of Apo and Glycated Human Serum Albumins to an Albumin-Selective Aptamer-Bound Graphene Quantum Dot Complex | Sittiwanichai S., Niramitranon J., Japrung D., Pongprayoon P. | 2023 | ACS Omega,
8(24), pp. 21862-21870 | 8 |
| 24 | The binding of apo and glucose-bound human serum albumins to a free graphene sheet in aqueous environment: Simulation studies | Sittiwanichai S., Japrung D., Pongprayoon P. | 2022 | Journal of Molecular Graphics and Modelling,
110, 108073 | 7 |
| 25 | Observing How Glutathione and S-Hexyl Glutathione Bind to Glutathione S-Transferase from Rhipicephalus (Boophilus) microplus | Rangubpit W., Suwan E., Sangthong D., Wongpanit K., Stich R.W., Pongprayoon P., Jittapalapong S. | 2022 | International Journal of Molecular Sciences,
23(21), 12775 | 7 |
| 26 | Effects of Boric Acid and Storage Temperature on the Analysis of Microalbumin Using Aptasensor-Based Fluorescent Detection | Sompark C., Sompark C., Chawjiraphan W., Sukmak M., Sukmak M., Cha’on U., Cha’on U., Anutrakulchai S., Anutrakulchai S., Pongprayoon P., Putnin T., Pimalai D., Pinrod V., Japrung D. | 2022 | Biosensors,
12(11), 915 | 7 |
| 27 | Investigating the binding affinities of fructose and galactose to human serum albumin: simulation studies | Awang T., Niramitranon J., Japrung D., Saparpakorn P., Pongprayoon P. | 2021 | Molecular Simulation | 6 |
| 28 | Evaluation of the binding mechanism of human defensin 5 in a bacterial membrane: A simulation study | Awang T., Chairatana P., Vijayan R., Pongprayoon P. | 2021 | International Journal of Molecular Sciences,
22(22), 12401 | 6 |
| 29 | What Happens When a Complementary DNA Meets miR-29a Cancer Biomarker in Complex with a Graphene Quantum Dot | Kuntip N., Japrung D., Pongprayoon P. | 2021 | ACS Applied Bio Materials | 6 |
| 30 | Dynamic and structural insights into tick serpin from Ixodes ricinus | Pongprayoon P., Niramitranon J., Kaewhom P., Kaewmongkol S., Suwan E., Stich R.W., Jittapalapong S. | 2020 | Journal of Biomolecular Structure and Dynamics,
38(8), pp. 2296-2303 | 6 |
| 31 | Modeling the Adsorption of the miR-29a Cancer Biomarker on a Graphene Quantum Dot | Kuntip N., Japrung D., Pongprayoon P. | 2021 | ACS Omega | 6 |
| 32 | Aggregation of Apo/Glycated Human Serum Albumins and Aptamer-Saturated Graphene Quantum Dot: A Simulation Study | Sittiwanichai S., Sittiwanichai S., Archapraditkul C., Japrung D., Shigeta Y., Mori T., Pongprayoon P. | 2024 | Biochemistry | 6 |
| 33 | Dynamic and structural properties of porcine serum albumins | Niramitranon J., Japrung D., Boonmee A., Koonawootrittriron S., Suwanasopee T., Jattawa D., Pongprayoon P. | 2023 | Molecular Simulation | 5 |
| 34 | Probing the binding affinities of imipenem and ertapenem for outer membrane carboxylate channel D1 (OccD1) from P. aeruginosa: simulation studies | Somboon K., Niramitranon J., Pongprayoon P. | 2017 | Journal of Molecular Modeling,
23(8), 227 | 5 |
| 35 | How do the protonation states of E296 and D312 in OmpF and D299 and D315 in homologous OmpC affect protein structure and dynamics? Simulation studies | Pongprayoon P. | 2014 | Computational Biology and Chemistry,
53(PB), pp. 226-234 | 5 |
| 36 | Structural dynamics of Rhipicephalus microplus serpin-3 | Pongprayoon P., Kaewhom P., Kaewmongkol S., Suwan E., Stich R.W., Wiriya B., Jittapalapong S. | 2021 | Molecular Simulation | 5 |
| 37 | The aggregation of multiple miR-29a cancer biomarkers induced by graphene quantum dots: Molecular dynamics simulations | Natmai S., Kuntip N., Japrung D., Pongprayoon P. | 2022 | Journal of Molecular Graphics and Modelling,
116, 108267 | 4 |
| 38 | Exploring the structural and dynamic differences between human carnosinase I (CN1) and II (CN2) | Tancharoen C., Tovivek B., Niramitranon J., Kityakarn S., Luksirikul P., Gorinstein S., Pongprayoon P. | 2023 | Proteins: Structure, Function and Bioinformatics | 4 |
| 39 | Comparative studies of structure and dynamics of caprine, leporine, ovine, and equine serum albumins | Pongprayoon P., Kuntip N., Suwanasopee T., Jattawa D., Niramitranon J., Japrung D., Koonawootrittriron S. | 2023 | Journal of Biomolecular Structure and Dynamics | 4 |
| 40 | Structural and dynamic properties of urinary human serum albumin fragments: a molecular dynamics study | Archapraditkul C., Janon K., Japrung D., Pongprayoon P. | 2023 | Journal of Biomolecular Structure and Dynamics | 4 |
| 41 | Comparative Analysis of the Gut Microbiota of Thai Indigenous Chicken Fed House Crickets | T-Thienprasert N.P., Jaithon T., Klomkliew P., Chanchaem P., Suwanasopee T., Koonawootrittriron S., Kovitvadhi A., Chundang P., Pongprayoon P., Kityakarn S., Luksirikul P., Payungporn S. | 2025 | Animals,
15(7), 1070 | 3 |
| 42 | Elucidating structure and dynamics of glutathione S-transferase from Rhipicephalus (Boophilus) microplus | Rangubpit W., Suwan E., Sangthong D., Wongpanit K., Stich R.W., Pongprayoon P., Jittapalapong S. | 2022 | Journal of Biomolecular Structure and Dynamics | 3 |
| 43 | Multiscale simulation studies of geometrical effects on solution transport through nanopores | Chaimanatsakun A., Japrung D., Pongprayoon P. | 2018 | Molecular Simulation,
44(1), pp. 12-20 | 3 |
| 44 | Exploring the Capabilities of Nanosized Graphene Oxide as a Pesticide Nanosorbent: Simulation Studies | Tadawattana P., Kawashima K., Sittiwanichai S., T-Thienprasert J., Mori T., Pongprayoon P. | 2025 | ACS Omega,
10(9), pp. 8951-8959 | 2 |
| 45 | The antioxidant activities and inhibitory effects on α-glucosidase and α-Amylase of ethanolic and aqueous extracts from various parts of Thai Caesalpinia sappan L. | Boonmee A., Moonrungsee N., Kasemsuk T., Puckdee W., Komonpanich P., Kunsook C., Khamchatra N.M., Nakeim S., Khamchutra A., Suninthaboonrana R., Chairatana P., Toviwek B., Pongprayoon P., Suwancharoen S. | 2023 | ScienceAsia,
49, pp. 618-626 | 2 |
| 46 | Molecular dynamics simulations of human α-defensin 5 (HD5) crossing gram-negative bacterial membrane | Awang T., Chairatana P., Pongprayoon P. | 2023 | PLoS ONE,
18(11 November), e0294041 | 2 |
| 47 | Assessment of soluble protein and collagen characteristics of dry-aged beef from Angus × Thai native and Charolais × Thai native crossbred steers | Saleepochn T., Chavanasilp P., Kanram P., Kityakarn S., Pantu P., Pongprayoon P., Suwanasopee T., Jattawa D., Luksirikul P., Koonawootrittriron S. | 2024 | Agriculture and Natural Resources,
58(6) | 1 |
| 48 | How a mixture of microRNA-29a (miR-29a) and microRNA-144 (miR-144) cancer biomarkers interacts with a graphene quantum dot | Traiphothon D., Awang T., Kuntip N., Japrung D., Pongprayoon P. | 2025 | Journal of Molecular Graphics and Modelling,
134, 108881 | 1 |
| 49 | Why Bestatin Prefers Human Carnosinase 2 (CN2) to Human Carnosinase 1 (CN1) | Toviwek B., Koonawootrittriron S., Suwanasopee T., Jattawa D., Pongprayoon P. | 2024 | Journal of Physical Chemistry B | 1 |
| 50 | Binding of Urinary Human Serum Albumin Fragments to Albumin-Selective Aptamer-Bound Graphene Quantum Dots: Simulation Studies | Archapraditkul C., Japrung D., Pongprayoon P. | 2025 | Langmuir | 1 |
| 51 | Analytical and Structural Evaluation of Recombinant Human Serum Albumin and Fragment F8 for Aptamer-Based Urinary Biomarker Detection | Archapraditkul C., Vanichtanankul J., Saeyang T., Chawjiraphan W., Boonbanjong P., Pongprayoon P., Japrung D. | 2025 | ACS Omega,
10(28), pp. 30935-30943 | 1 |
| 52 | The effect of full glycation on structure and function of human serum albumin | Tadawattana P., Sittiwanichai S., Japrung D., Pongprayoon P. | 2025 | Journal of Biomolecular Structure and Dynamics | 1 |
| 53 | How Human Serum Albumin-Selective Aptamers Complexed with Graphene Quantum Dot Recognize Canine and Feline Albumins: Simulation Studies | Archapraditkul C., Sittiwanichai S., Nuchanong P., Awang T., Niramitranon J., Japrung D., Pongprayoon P. | 2025 | Journal of Physical Chemistry B,
129(45), pp. 11693-11701 | 0 |
| 54 | Molecular characterization of Rhipicephalus microplus and Haemaphysalis bispinosa ticks from cattle across Thailand: Regional identification and evidence of different genetic sub-structures between mainland and peninsular populations | Sangthong D., Sangthong P., Rangubpit W., Pongprayoon P., Suwan E., Wongpanit K., Chimnoi W., Simking P., Ngow S.S., Morand S., Stich R.W., Jittapalapong S. | 2025 | Plos One,
20(11 November), e0337052 | 0 |
| 55 | Molecular mechanisms of micelle formation of coco-glucosides in an aqueous solution | Bamrung P., Tantala J., Rachtanapun P., Rachtanapun C., Pongprayoon P. | 2026 | Journal of Food Engineering,
413, 113016 | 0 |
| 56 | Alkaline-pH-shifted mung bean protein isolate for spray-dried probiotic encapsulation: Insights into molecular cell wall interactions and oxidative protection | Rodklongtan A., Laurujisawat P., Dumrongchai T., Innok W., Toviwek B., Pongprayoon P., Chitprasert P. | 2026 | Food Chemistry X,
34, 103562 | 0 |
| 57 | How the Universal MSA52 Aptamer Recognizes the SARS-CoV-2 Spike Protein | Awang T., Samsudin F., Japrung D., Bond P.J., Bond P.J., Pongprayoon P. | 2025 | ACS Omega,
10(39), pp. 45696-45705 | 0 |
| 58 | The Binding of Brazilin from C. sappan to the Full-Length SARS-CoV-2 Spike Proteins | Bamrung P., Toviwek B., Samsudin F., Chairatana P., Bond P.J., Bond P.J., Pongprayoon P. | 2025 | International Journal of Molecular Sciences,
26(9), 4100 | 0 |
| 59 | Integrating Artificial Neural Networks with Finite Element Method for Predicting Structural Responses of Plates with a Central Circular Hole Subjected to Uniform Tensile Traction | Pongprayoon P., Chaimanatsakun A. | 2025 | Proceedings of the 2024 3rd International Symposium on Computing and Artificial Intelligence Iscai 2024,
pp. 54-56 | 0 |
| 60 | EFFECTS OF MOLECULAR CHAIN COVERAGE AND MOLECULAR CHAIN LENGTH ON STRENGTH AND PACKING OF SURFACE COATING MATERIALS: DFT CALCULATIONS | Khongpracha P., Pongprayoon P., Prasittichai C., Nokbin S. | 2024 | Suranaree Journal of Science and Technology,
31(5), pp. 1-8, 030223 | 0 |
| 61 | The binding modes of brazilin and hematein from Caesalpinia sappan L. to Cutibacterium acnes lipase: Simulation studies | Pengsawang M., Toviwek B., Sangthong W., Boonmee A., Chairatana P., Pongprayoon P. | 2025 | PLoS ONE,
20(3 March), e0318706 | 0 |
| 62 | How a mixture of urinary human serum albumin fragments survives in urine-mimicking pH conditions: Simulation studies | Archapraditkul C., Japrung D., Pongprayoon P. | 2025 | Journal of Molecular Graphics and Modelling,
138, 109051 | 0 |
| 63 | Revealing mechanical strength of Nanopores using atomic finite element techniques | Pongprayoon P., Chaimanatsakun A. | 2018 | Materials Science Forum,
934 MSF, pp. 24-29 | 0 |
| 64 | How ractopamine binds to bovine serum albumin at the drug site 1 | Janoon K., Kuntip N., Niramitranon J., Pongprayoon P. | 2023 | Molecular Simulation | 0 |
| 65 | What make malarial adenosine deaminase from PLASMODIUM VIVAX recognise adenosine and 5′-methylthioadenosine: simulation studies | Chotpatiwetchkul W., Sittiwanichai S., Niramitranon J., Pongprayoon P. | 2021 | Journal of Biomolecular Structure and Dynamics | 0 |
| 66 | Molecular insights into the adsorption mechanism of E21R and T7E21R human defensin 5 on a bacterial membrane | Chumponanomakun P., Niramitranon J., Chairatana P., Pongprayoon P. | 2022 | Molecular Simulation | 0 |