| # | Document title | Authors | Year | Source | Cited by |
| 1 | The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum | Agren R., Liu L., Shoaie S., Vongsangnak W., Nookaew I., Nielsen J. | 2013 | PLoS Computational Biology,
9(3), e1002980 | 330 |
| 2 | De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology | Nijkamp J.F., Nijkamp J.F., van den Broek M., van den Broek M., Datema E., Datema E., Datema E., de Kok S., de Kok S., de Kok S., Bosman L., Bosman L., Luttik M.A., Luttik M.A., Daran-Lapujade P., Daran-Lapujade P., Vongsangnak W., Vongsangnak W., Nielsen J., Heijne W.H.M., Klaassen P., Paddon C.J., Platt D., Kötter P., van Ham R.C., van Ham R.C., van Ham R.C., Reinders M.J.T., Reinders M.J.T., Reinders M.J.T., Pronk J.T., Pronk J.T., de Ridder D., de Ridder D., de Ridder D., de Ridder D., Daran J.M., Daran J.M., Daran J.M. | 2012 | Microbial Cell Factories,
11, 36 | 231 |
| 3 | Biomedical text mining and its applications in cancer research | Zhu F., Patumcharoenpol P., Zhang C., Yang Y., Chan J., Meechai A., Vongsangnak W., Shen B., Shen B. | 2013 | Journal of Biomedical Informatics,
46(2), pp. 200-211 | 206 |
| 4 | Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis | Hong K., Hong K., Vongsangnak W., Vongsangnak W., Vemuri G., Nielsen J., Nielsen J. | 2011 | Proceedings of the National Academy of Sciences of the United States of America,
108(29), pp. 12179-12184 | 145 |
| 5 | Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis | Li Y., Zhang Z., Liu F., Vongsangnak W., Jing Q., Jing Q., Shen B. | 2012 | Nucleic Acids Research,
40(10), pp. 4298-4305 | 131 |
| 6 | A trispecies Aspergillus microarray: Comparative transcriptomics of three Aspergillus species | Andersen M., Vongsangnak W., Panagiotou G., Salazar M., Lehmann L., Nielsen J. | 2008 | Proceedings of the National Academy of Sciences of the United States of America,
105(11), pp. 4387-4392 | 108 |
| 7 | Towards efficient extraction of notoginseng saponins from cultured cells of Panax notoginseng | Vongsangnak W., Vongsangnak W., Gua J., Chauvatcharin S., Zhong J.J. | 2004 | Biochemical Engineering Journal,
18(2), pp. 115-120 | 107 |
| 8 | BioMet Toolbox: Genome-wide analysis of metabolism | Cvijovic M., Olivares-Hernandez R., Agren R., Dahr N., Vongsangnak W., Nookaew I., Patil K., Nielsen J. | 2010 | Nucleic Acids Research,
38(SUPPL. 2), gkq404 | 90 |
| 9 | Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae | Vongsangnak W., Vongsangnak W., Olsen P., Hansen K., Krogsgaard S., Nielsen J., Nielsen J. | 2008 | BMC Genomics,
9, 245 | 81 |
| 10 | Whole genome sequencing of Saccharomyces cerevisiae: From genotype to phenotype for improved metabolic engineering applications | Otero J., Otero J., Otero J., Vongsangnak W., Vongsangnak W., Vongsangnak W., Asadollahi M., Asadollahi M., Asadollahi M., Olivares-Hernandes R., Olivares-Hernandes R., Maury J., Maury J., Farinelli L., Barlocher L., Østerås M., Schalk M., Clark A., Nielsen J., Nielsen J. | 2010 | BMC Genomics,
11(1), 723 | 68 |
| 11 | Optimizing cultivation of Cordyceps militaris for fast growth and cordycepin overproduction using rational design of synthetic media | Raethong N., Wang H., Wang H., Nielsen J., Nielsen J., Vongsangnak W., Vongsangnak W. | 2020 | Computational and Structural Biotechnology Journal,
18, pp. 1-8 | 61 |
| 12 | Heterologous production of polyunsaturated fatty acids in Saccharomyces cerevisiae causes a global transcriptional response resulting in reduced proteasomal activity and increased oxidative stress | Ruenwai R., Neiss A., Laoteng K., Vongsangnak W., Dalfard A.B., Dalfard A.B., Cheevadhanarak S., Petranovic D., Nielsen J. | 2011 | Biotechnology Journal,
6(3), pp. 343-356 | 53 |
| 13 | Impacts of killing process on the nutrient content, product stability and in vitro digestibility of black soldier fly (Hermetia illucens) larvae meals | Zhen Y., Chundang P., Zhang Y., Wang M., Vongsangnak W., Pruksakorn C., Kovitvadhi A. | 2020 | Applied Sciences (Switzerland),
10(17), 6099 | 49 |
| 14 | Evaluation and comparison of multiple aligners for next-generation sequencing data analysis | Shang J., Shang J., Zhu F., Vongsangnak W., Tang Y., Zhang W., Shen B. | 2014 | BioMed Research International,
2014, 309650 | 49 |
| 15 | Genome-scale metabolic network of Cordyceps militaris useful for comparative analysis of entomopathogenic fungi | Vongsangnak W., Raethong N., Mujchariyakul W., Nguyen N., Leong H., Laoteng K. | 2017 | Gene,
626, pp. 132-139 | 49 |
| 16 | Uncovering global metabolic response to cordycepin production in Cordyceps militaris through transcriptome and genome-scale network-driven analysis | Raethong N., Laoteng K., Vongsangnak W. | 2018 | Scientific Reports,
8(1), 9250 | 43 |
| 17 | Alternative metabolic routes in channeling xylose to cordycepin production of Cordyceps militaris identified by comparative transcriptome analysis | Wongsa B., Raethong N., Chumnanpuen P., Wong-ekkabut J., Laoteng K., Vongsangnak W. | 2020 | Genomics,
112(1), pp. 629-636 | 43 |
| 18 | Protective effect of lactobacillus reuteri KUB-AC5 against salmonella enteritidis challenge in chickens | Nakphaichit M., Sobanbua S., Siemuang S., Vongsangnak W., Nakayama J., Nitisinprasert S. | 2019 | Beneficial Microbes,
10(1), pp. 43-54 | 43 |
| 19 | Increased Lipid Accumulation in Mucor circinelloides by Overexpression of Mitochondrial Citrate Transporter Genes | Yang J., Li S., Kabir Khan M., Garre V., Vongsangnak W., Song Y. | 2019 | Industrial and Engineering Chemistry Research,
58(6), pp. 2125-2134 | 41 |
| 20 | Genome-scale analysis of the metabolic networks of oleaginous Zygomycete fungi | Vongsangnak W., Ruenwai R., Tang X., Hu X., Zhang H., Shen B., Song Y., Laoteng K. | 2013 | Gene,
521(1), pp. 180-190 | 40 |
| 21 | Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis | Salazar M., Vongsangnak W., Panagiotou G., Andersen M., Nielsen J. | 2009 | Molecular Genetics and Genomics,
282(6), pp. 571-586 | 35 |
| 22 | Genome-wide analysis of maltose utilization and regulation in aspergilli | Vongsangnak W., Salazar M., Hansen K., Nielsen J. | 2009 | Microbiology,
155(12), pp. 3893-3902 | 34 |
| 23 | Molecular mechanism of Forkhead box M1 inhibition by thiostrepton in breast cancer cells | Kongsema M., Kongsema M., Wongkhieo S., Khongkow M., Lam E., Boonnoy P., Boonnoy P., Vongsangnak W., Wong-Ekkabut J., Wong-Ekkabut J. | 2019 | Oncology Reports,
42(3), pp. 953-962 | 33 |
| 24 | Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using "-omics" techniques | Piddocke M., Fazio A., Vongsangnak W., Vongsangnak W., Wong M., Heldt-Hansen H., Workman C., Nielsen J., Olsson L., Olsson L. | 2011 | Microbial Cell Factories,
10, 27 | 31 |
| 25 | Its2 sequencing and targeted meta-proteomics of infant gut mycobiome reveal the functional role of rhodotorula sp. During atopic dermatitis manifestation | Mok K., Suratanon N., Roytrakul S., Charoenlappanit S., Patumcharoenpol P., Chatchatee P., Vongsangnak W., Nakphaichit M. | 2021 | Journal of Fungi,
7(9), 748 | 30 |
| 26 | Genome-scale metabolic modeling of Mucor circinelloides and comparative analysis with other oleaginous species | Vongsangnak W., Vongsangnak W., Klanchui A., Tawornsamretkit I., Tatiyaborwornchai W., Laoteng K., Meechai A. | 2016 | Gene,
583(2), pp. 121-129 | 28 |
| 27 | Informatics for metabolomics | Kusonmano K., Vongsangnak W., Chumnanpuen P. | 2016 | Advances in Experimental Medicine and Biology,
939, pp. 91-115 | 28 |
| 28 | In silicoandin vitrodesign of cordycepin encapsulation in liposomes for colon cancer treatment | Khuntawee W., Khuntawee W., Amornloetwattana R., Amornloetwattana R., Vongsangnak W., Namdee K., Yata T., Karttunen M., Wong-Ekkabut J., Wong-Ekkabut J. | 2021 | RSC Advances,
11(15), pp. 8475-8484 | 28 |
| 29 | Annotation and analysis of malic enzyme genes encoding for multiple isoforms in the fungus Mucor circinelloides CBS 277.49 | Vongsangnak W., Zhang Y., Chen W., Ratledge C., Ratledge C., Song Y. | 2012 | Biotechnology Letters,
34(5), pp. 941-947 | 26 |
| 30 | Transcriptome Landscapes of Salt-Susceptible Rice Cultivar IR29 Associated with a Plant Growth Promoting Endophytic Streptomyces | Kruasuwan W., Kruasuwan W., Kruasuwan W., Lohmaneeratana K., Munnoch J.T., Vongsangnak W., Jantrasuriyarat C., Hoskisson P.A., Thamchaipenet A. | 2023 | Rice,
16(1), 6 | 24 |
| 31 | Chondroitin Sulfate and Its Derivatives: A Review of Microbial and Other Production Methods | Awofiranye A.E., Hudson J., Tithi A.D., Linhardt R.J., Vongsangnak W., Koffas M.A.G., Koffas M.A.G. | 2022 | Fermentation,
8(7), 323 | 23 |
| 32 | Metabolic responses of carotenoid and cordycepin biosynthetic pathways in cordyceps militaris under light-programming exposure through genome-wide transcriptional analysis | Thananusak R., Laoteng K., Raethong N., Zhang Y., Vongsangnak W. | 2020 | Biology,
9(9), pp. 1-14, 242 | 23 |
| 33 | Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression | Li Y., Vongsangnak W., Chen L., Shen B. | 2014 | BMC Medical Genomics,
7(SUPPL.1), S3 | 22 |
| 34 | Genome-scale metabolic representation of Amycolatopsis balhimycina | Vongsangnak W., Vongsangnak W., Vongsangnak W., Figueiredo L., Figueiredo L., Figueiredo L., Förster J., Weber T., Thykaer J., Stegmann E., Wohlleben W., Nielsen J., Nielsen J. | 2012 | Biotechnology and Bioengineering,
109(7), pp. 1798-1807 | 20 |
| 35 | Analysis of human gut microbiome: Taxonomy and metabolic functions in thai adults | Raethong N., Nakphaichit M., Suratannon N., Sathitkowitchai W., Sathitkowitchai W., Weerapakorn W., Keawsompong S., Vongsangnak W. | 2021 | Genes,
12(3), pp. 1-13, 331 | 20 |
| 36 | Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response | Geijer C., Pirkov I., Vongsangnak W., Vongsangnak W., Ericsson A., Nielsen J., Krantz M., Krantz M., Hohmann S. | 2012 | BMC Genomics,
13(1), 554 | 19 |
| 37 | Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics | Kingkaw A., Nakphaichit M., Suratannon N., Nitisinprasert S., Wongoutong C., Chatchatee P., Krobthong S., Charoenlappanit S., Roytrakul S., Vongsangnak W. | 2020 | PeerJ,
8, e9988 | 19 |
| 38 | Post genome-wide association studies functional characterization of prostate cancer risk loci | Jiang J., Cui W., Vongsangnak W., Hu G., Shen B. | 2013 | BMC Genomics,
14(SUPP 8), S9 | 18 |
| 39 | Dissecting metabolic behavior of lipid over-producing strain of Mucor circinelloides through genome-scale metabolic network and multi-level data integration | Vongsangnak W., Kingkaw A., Yang J., Song Y., Laoteng K. | 2018 | Gene,
670, pp. 87-97 | 18 |
| 40 | Construction of Light-Responsive Gene Regulatory Network for Growth, Development and Secondary Metabolite Production in Cordyceps militaris | In-On A., Thananusak R., Ruengjitchatchawalya M., Vongsangnak W., Laomettachit T. | 2022 | Biology,
11(1), 71 | 18 |
| 41 | Global Metabolic Changes by Bacillus Cyclic Lipopeptide Extracts on Stress Responses of Para Rubber Leaf | Tunsagool P., Kruaweangmol P., Sunpapao A., Kuyyogsuy A., Jaresitthikunchai J., Roytrakul S., Vongsangnak W. | 2023 | Emerging Science Journal,
7(3), pp. 974-990 | 18 |
| 42 | Probing Genome-Scale Model Reveals Metabolic Capability and Essential Nutrients for Growth of Probiotic Limosilactobacillus reuteri KUB-AC5 | Namrak T., Raethong N., Raethong N., Jatuponwiphat T., Nitisinprasert S., Vongsangnak W., Nakphaichit M. | 2022 | Biology,
11(2), 294 | 16 |
| 43 | Comparisons of Prostate Cancer Inhibitors Abiraterone and TOK-001 Binding with CYP17A1 through Molecular Dynamics | Xiao F., Yang M., Xu Y., Vongsangnak W. | 2015 | Computational and Structural Biotechnology Journal,
13, pp. 520-527 | 16 |
| 44 | Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae) | Vongsangnak W., Chumnanpuen P., Sriboonlert A. | 2016 | PeerJ,
2016(10), e2534 | 15 |
| 45 | Probing Carbon Utilization of Cordyceps militaris by Sugar Transportome and Protein Structural Analysis | Sirithep K., Sirithep K., Xiao F., Raethong N., Zhang Y., Laoteng K., Hu G., Vongsangnak W., Vongsangnak W. | 2020 | Cells,
9(2), 851 | 15 |
| 46 | Comparative genome analysis reveals metabolic traits associated with probiotics properties in Lactobacillus reuteri KUB-AC5 | Jatuponwiphat T., Namrak T., Supataragul A., Nitisinprasert S., Nakphaichit M., Vongsangnak W. | 2019 | Gene Reports,
17, 100536 | 15 |
| 47 | Efficient de novo production of bioactive cordycepin by Aspergillus oryzae using a food-grade expression platform | Jeennor S., Anantayanon J., Panchanawaporn S., Chutrakul C., Vongsangnak W., Laoteng K. | 2023 | Microbial Cell Factories,
22(1), 253 | 15 |
| 48 | Programmed cell death and Salmonella pathogenesis: an interactive overview | Zhang Y., Zhang Y., Xu M., Guo Y., Chen L., Vongsangnak W., Xu Q., Lu L. | 2023 | Frontiers in Microbiology,
14, 1333500 | 14 |
| 49 | Exploring Longitudinal Gut Microbiome towards Metabolic Functional Changes Associated in Atopic Dermatitis in Early Childhood | Patumcharoenpol P., Kingkaw A., Nakphaichit M., Chatchatee P., Chatchatee P., Suratannon N., Suratannon N., Panagiotou G., Panagiotou G., Panagiotou G., Vongsangnak W. | 2023 | Biology,
12(9), 1262 | 14 |
| 50 | MetGEMs Toolbox: Metagenome-scale models as integrative toolbox for uncovering metabolic functions and routes of human gut microbiome | Patumcharoenpol P., Nakphaichit M., Panagiotou G., Panagiotou G., Panagiotou G., Senavonge A., Suratannon N., Vongsangnak W. | 2021 | PLoS Computational Biology,
17(1 December), e1008487 | 13 |
| 51 | Systems biology and metabolic engineering of Arthrospira cell factories | Klanchui A., Vorapreeda T., Vongsangnak W., Khannapho C., Cheevadhanarak S., Meechai A. | 2012 | Computational and Structural Biotechnology Journal,
3(4), pp. e201210015, e201210015 | 13 |
| 52 | Uncovering nutrients and energy related gene functions of black soldier fly Hermetia illucens strain KUP | Sukmak R., Suttinun C., Kovitvadhi U., Kovitvadhi A., Vongsangnak W. | 2024 | Gene,
896, 148045 | 12 |
| 53 | Dissecting Metabolic Regulation in Mycelial Growth and Fruiting Body Developmental Stages of Cordyceps militaris through Integrative Transcriptome Analysis | Thananusak R., Laoteng K., Raethong N., Koffas M., Koffas M., Vongsangnak W. | 2022 | Biotechnology and Bioprocess Engineering | 12 |
| 54 | Analyzing Predominant Bacterial Species and Potential Short-Chain Fatty Acid-Associated Metabolic Routes in Human Gut Microbiome Using Integrative Metagenomics | Kingkaw A., Raethong N., Patumcharoenpol P., Suratannon N., Nakphaichit M., Keawsompong S., Roytrakul S., Vongsangnak W. | 2023 | Biology,
12(1), 21 | 12 |
| 55 | Protein–protein interface and disease: Perspective from biomolecular networks | Hu G., Xiao F., Li Y., Li Y., Vongsangnak W. | 2017 | Advances in Biochemical Engineering/Biotechnology,
160, pp. 57-74 | 12 |
| 56 | Whole genome analysis and elucidation of docosahexaenoic acid (DHA) biosynthetic pathway in Aurantiochytrium sp. SW1 | Prabhakaran P., Prabhakaran P., Raethong N., Nazir Y., Nazir Y., Halim H., Yang W., Vongsangnak W., Abdul Hamid A., Song Y. | 2022 | Gene,
846, 146850 | 12 |
| 57 | Identification of Differentially Expressed Non-coding RNA Networks With Potential Immunoregulatory Roles During Salmonella Enteritidis Infection in Ducks | Zhang Y., Dong X., Hou L., Cao Z., Zhu G., Vongsangnak W., Xu Q., Chen G. | 2021 | Frontiers in Veterinary Science,
8, 692501 | 11 |
| 58 | Integrated analysis of the global transcriptional response to α-amylase over-production by Aspergillus oryzae | Vongsangnak W., Hansen K., Nielsen J. | 2011 | Biotechnology and Bioengineering,
108(5), pp. 1130-1139 | 11 |
| 59 | Identification of potential candidate genes involved in the sex determination cascade in an aquatic firefly, Sclerotia aquatilis (Coleoptera, Lampyridae) | Nguantad S., Chumnanpuen P., Thancharoen A., Vongsangnak W., Sriboonlert A. | 2020 | Genomics,
112(3), pp. 2590-2602 | 10 |
| 60 | Metabolic traits specific for lipid-overproducing strain of Mucor circinelloides WJ11 identified by genome-scale modeling approach | Na Ayudhya N.I., Laoteng K., Song Y., Meechai A., Vongsangnak W. | 2019 | PeerJ,
7, 7015 | 10 |
| 61 | Cyanobacterial biofuels: Strategies and developments on network and modeling | Klanchui A., Raethong N., Prommeenate P., Vongsangnak W., Meechai A. | 2017 | Advances in Biochemical Engineering/Biotechnology,
160, pp. 75-102 | 10 |
| 62 | An integrated text mining framework for metabolic interaction network reconstruction | Patumcharoenpol P., Patumcharoenpol P., Doungpan N., Meechai A., Shen B., Chan J.H., Vongsangnak W., Vongsangnak W. | 2016 | PeerJ,
2016(3), e1811 | 10 |
| 63 | Comparative genomics-based probiotic relevance of Limosilactobacillus fermentum KUB-D18 | Phujumpa P., Muangham S., Jatuponwiphat T., Koffas M., Nakphaichit M., Vongsangnak W. | 2022 | Gene,
840, 146747 | 10 |
| 64 | Enhancing Genome-Scale Model by Integrative Exometabolome and Transcriptome: Unveiling Carbon Assimilation towards Sphingolipid Biosynthetic Capability of Cordyceps militaris | Cheawchanlertfa P., Chitcharoen S., Chitcharoen S., Raethong N., Liu Q., Chumnanpuen P., Soommat P., Song Y., Song Y., Koffas M., Laoteng K., Vongsangnak W. | 2022 | Journal of Fungi,
8(8), 887 | 9 |
| 65 | The salmonella effector Hcp modulates infection response, and affects salmonella adhesion and egg contamination incidences in ducks | Song L., Wu J., Weng K., Yao F., Vongsangnak W., Zhu G., Chen G., Zhang Y., Xu Q. | 2022 | Frontiers in Cellular and Infection Microbiology,
12, 948237 | 9 |
| 66 | Revealing holistic metabolic responses associated with lipid and docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1 | Prabhakaran P., Prabhakaran P., Raethong N., Thananusak R., Nazir M.Y.M., Nazir M.Y.M., Sapkaew C., Soommat P., Kingkaw A., Hamid A.A., Vongsangnak W., Song Y. | 2023 | Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids,
1868(5), 159306 | 9 |
| 67 | Synbiotic-driven modulation of the gut microbiota and metabolic functions related to obesity: insights from a human gastrointestinal model | Mok K., Tomtong P., Ogawa T., Nagai K., Torrungruang P., Charoensiddhi S., Nakayama J., Wanikorn B., Nitisinprasert S., Vongsangnak W., Nakphaichit M. | 2025 | BMC Microbiology,
25(1), 250 | 8 |
| 68 | Exploring Morchella esculenta polysaccharide extracts: In vitro digestion, fermentation characteristics, and prebiotic potential for modulating gut microbiota and function | Liu B., Tomtong P., Charoensiddhi S., Vongsangnak W. | 2025 | International Journal of Biological Macromolecules,
318, 144910 | 8 |
| 69 | Follicular fluid-derived exosomal HMOX1 promotes granulosa cell ferroptosis involved in follicular atresia in geese (Anser cygnoides) | Zhang Y., Jiang Y., Dong X., Luo S., Jiao G., Weng K., Bao Q., Zhang Y., Vongsangnak W., Chen G., Xu Q. | 2024 | Poultry Science,
103(8), 103912 | 8 |
| 70 | Preliminary characterization of gut mycobiome enterotypes reveals the correlation trends between host metabolic parameter and diet: a case study in the Thai Cohort | Mok K., Poolsawat T., Somnuk S., Wanikorn B., Patumcharoenpol P., Nitisinprasert S., Vongsangnak W., Nakphaichit M. | 2024 | Scientific Reports,
14(1), 5805 | 7 |
| 71 | Functional genomics and systems biology of Cordyceps species for biotechnological applications | Raethong N., Raethong N., Thananusak R., Cheawchanlertfa P., Cheawchanlertfa P., Prabhakaran P., Rattanaporn K., Laoteng K., Koffas M., Vongsangnak W. | 2023 | Current Opinion in Biotechnology,
81, 102939 | 7 |
| 72 | Preliminary study: Proteomic profiling uncovers potential proteins for biomonitoring equine melanocytic neoplasm | Tesena P., Tesena P., Kingkaw A., Vongsangnak W., Pitikarn S., Phaonakrop N., Roytrakul S., Kovitvadhi A. | 2021 | Animals,
11(7), 1913 | 7 |
| 73 | Reconstruction of insect hormone pathways in an aquatic firefly, Sclerotia aquatilis (Coleoptera: Lampyridae), using RNA-seq | Chanchay P., Vongsangnak W., Thancharoen A., Sriboonlert A. | 2019 | PeerJ,
2019(8) | 7 |
| 74 | Comparative metabolic capabilities for Micrococcus luteus NCTC 2665, the "Fleming" strain, and actinobacteria | Rokem J., Vongsangnak W., Vongsangnak W., Nielsen J. | 2011 | Biotechnology and Bioengineering,
108(11), pp. 2770-2775 | 7 |
| 75 | Iron-associated protein interaction networks reveal the key functional modules related to survival and virulence of Pasteurella multocida | Jatuponwiphat T., Chumnanpuen P., Othman S., E-kobon T., Vongsangnak W. | 2019 | Microbial Pathogenesis,
127, pp. 257-266 | 6 |
| 76 | Systems biology methods and developments of filamentous fungi in relation to the production of food ingredients | Vongsangnak W., Nielsen J. | 2013 | Microbial Production of Food Ingredients, Enzymes and Nutraceuticals,
pp. 19-41 | 6 |
| 77 | Analysis of genome-wide coexpression and coevolution of Aspergillus oryzae and Aspergillus niger | Vongsangnak W., Nookaew I., Salazar M., Nielsen J. | 2010 | OMICS A Journal of Integrative Biology,
14(2), pp. 165-175 | 5 |
| 78 | Light-Exposed Metabolic Responses of Cordyceps militaris through Transcriptome-Integrated Genome-Scale Modeling | Soommat P., Raethong N., Ruengsang R., Thananusak R., Laomettachit T., Laoteng K., Saithong T., Vongsangnak W. | 2024 | Biology,
13(3), 139 | 5 |
| 79 | Holistic transcriptional responses of Cordyceps militaris to different culture temperatures | Lusakunwiwat P., Thananusak R., Nopgason R., Laoteng K., Vongsangnak W. | 2024 | Gene,
923, 148574 | 4 |
| 80 | Dissecting Metabolic Functions and Sugar Transporters Using Genome and Transportome of Probiotic Limosilactobacillus fermentum KUB-D18 | He Y., Mok K., Chumnanpuen P., Nakphaichit M., Vongsangnak W. | 2025 | Genes,
16(3), 348 | 4 |
| 81 | Translational biomedical informatics and computational systems medicine | Zhao Z., Zhao Z., Shen B., Lu X., Vongsangnak W. | 2013 | BioMed Research International,
2013, 237465 | 4 |
| 82 | Integrative growth physiology and transcriptome profiling of probiotic limosilactobacillus reuteri kub-ac5 | Jatuponwiphat T., Namrak T., Nitisinprasert S., Nakphaichit M., Vongsangnak W. | 2021 | PeerJ,
9, e12226 | 4 |
| 83 | Faecal Proteomics and Functional Analysis of Equine Melanocytic Neoplasm in Grey Horses | Tesena P., Tesena P., Kingkaw A., Phaonakrop N., Roytrakul S., Limudomporn P., Vongsangnak W., Kovitvadhi A. | 2022 | Veterinary Sciences,
9(2), 94 | 4 |
| 84 | Weighted gene co-expression network analysis identifies potential regulators in response to Salmonella Enteritidis challenge in the reproductive tract of laying ducks | ZHANG Y., LUO S.w., HOU L.e., GU T.t., ZHU G.q., VONGSANGNAK W., XU Q., CHEN G.h. | 2022 | Journal of Integrative Agriculture,
21(8), pp. 2384-2398 | 4 |
| 85 | Dual Transcriptomic Analyses Unveil Host–Pathogen Interactions Between Salmonella enterica Serovar Enteritidis and Laying Ducks (Anas platyrhynchos) | Zhang Y., Song L., Hou L., Cao Z., Vongsangnak W., Zhu G., Xu Q., Chen G. | 2021 | Frontiers in Microbiology,
12, 705712 | 3 |
| 86 | Screening and identification of SipC-interacting proteins in Salmonella enteritidis using Gal4 yeast two-hybrid system in duck | Zhang Y., Gu T., Chen Y., Zhu G., Vongsangnak W., Xu Q., Chen G. | 2019 | PeerJ,
2019(9), e7663 | 3 |
| 87 | Sequence- and Structure-Based Functional Annotation and Assessment of Metabolic Transporters in Aspergillus oryzae: A Representative Case Study | Raethong N., Wong-Ekkabut J., Laoteng K., Vongsangnak W. | 2016 | BioMed Research International,
2016, 8124636 | 3 |
| 88 | Expanded Gene Regulatory Network Reveals Potential Light-Responsive Transcription Factors and Target Genes in Cordyceps militaris | Buradam P., Thananusak R., Koffas M., Koffas M., Chumnanpuen P., Vongsangnak W. | 2024 | International Journal of Molecular Sciences,
25(19), 10516 | 3 |
| 89 | Characterizing metabolites and biotransformation in lactic acid bacteria fermented Millennium cherry tomato juice using integrated analytical tools | Wang H., Sakda P., Chen L., Xie J., Yu J., Liu B., Vongsangnak W., Wang R. | 2025 | Food Chemistry,
492, 145447 | 3 |
| 90 | Exploring Protein Functions of Gut Bacteriome and Mycobiome in Thai Infants Associated with Atopic Dermatitis Through Metaproteomic and Host Interaction Analysis | Chantanaskul T., Patumcharoenpol P., Roytrakul S., Kingkaw A., Vongsangnak W. | 2024 | International Journal of Molecular Sciences,
25(24), 13533 | 3 |
| 91 | Functional insight into Cordyceps militaris sugar transporters by structure modeling, network analysis and allosteric regulation | Liu X., Zhang H., Zhou Z., Zhou Z., Prabhakaran P., Vongsangnak W., Hu G., Hu G., Xiao F. | 2023 | Physical Chemistry Chemical Physics | 3 |
| 92 | Uncovering global lipid accumulation routes towards docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1 using integrative proteomic analysis | Prabhakaran P., Prabhakaran P., Nazir M.Y.M., Nazir M.Y.M., Thananusak R., Hamid A.A., Vongsangnak W., Song Y. | 2023 | Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids,
1868(11), 159381 | 3 |
| 93 | The development of molecular genetics concept test for senior high school students using Rasch analysis | Sari I.J., Sari I.J., Pongsophon P., Vongsangnak W., Pimthong P., Pitiporntapin S. | 2022 | International Journal of Evaluation and Research in Education,
11(4), pp. 1687-1695 | 2 |
| 94 | Parallel screening and cheminformatics modeling of flavonoid activated aptasensors | Xiu Y., Xiu Y., Xiu Y., Zhang N., Prabhakaran P., Jang S., Yuan Q., Breneman C.M., Jung G.Y., Vongsangnak W., Koffas M.A.G., Koffas M.A.G. | 2022 | Synthetic and Systems Biotechnology,
7(4), pp. 1148-1158 | 2 |
| 95 | Gut microbiome and serum metabolome analyses identify Bacteroides fragilis as regulators of serotonin content and PRL secretion in broody geese | Zhang Y., Zhou N., Wu J., Song L., Bao Q., Weng K., Zhang Y., Vongsangnak W., Chen G., Xu Q. | 2024 | Journal of Integrative Agriculture,
23(6), pp. 2033-2051 | 2 |
| 96 | Enhancing functional properties and analysis of sugar and metabolite composition of Hylocereus megalanthus juice through Bifidobacterium fermentation | Sakda P., Wang H., Li J., Zheng J., He Y., Vongsangnak W., Wang R. | 2025 | Food Chemistry X,
30, 102945 | 2 |
| 97 | Dysbiosis involving methionine and PPAR-γ pathways is associated with early onset atopic dermatitis and food allergy | Senavonge A., Senavonge A., Nakphaichit M., Vongsangnak W., Roytrakul S., Patumcharoenpol P., Kingkaw A., Wongoutong C., Weerapakorn W., Pornputtapong N., Pornputtapong N., La-Ongkham O., Poovorawan Y., Wanlapakorn N., Kittipongpattana P., Nitisinprasert S., Chatchatee P., Suratannon N. | 2025 | Asian Pacific Journal of Allergy and Immunology,
43(4), pp. 908-920 | 2 |
| 98 | Bibliome mining platform and application for building metabolic interaction network | Patumcharoenpol P., Patumcharoenpol P., Chan J., Meechai A., Shen B., Vongsangnak W. | 2012 | Procedia Computer Science,
11, pp. 55-62 | 2 |
| 99 | Comparative gene clusters analysis of Cordyceps militaris and related entomopathogenic fungi | Vongsangnak W., Mujchariyakul W., Wizaza C., Patumcharoenpol P., Kittichotirat W. | 2018 | ACM International Conference Proceeding Series | 2 |
| 100 | In silico analysis of mucor circinelloides genome-scale model for enhancing lipid production | Klanchui A., Vongsangnak W., Laoteng K., Meechai A. | 2016 | ACM International Conference Proceeding Series,
pp. 14-18 | 2 |
| 101 | Dissecting Holistic Metabolic Acclimatization of Mucor circinelloides WJ11 Defective in Carotenoid Biosynthesis | Li F., Li F., Thananusak R., Raethong N., Yang J., Wei M., Zhao X., Laoteng K., Song Y., Vongsangnak W. | 2024 | Biology,
13(4), 276 | 1 |
| 102 | Phosphorylation of SNW1 protein associated with equine melanocytic neoplasm identified in serum and feces | Vinijkumthorn R., Kingkaw A., Yanyongsirikarn P., Phaonakrop N., Roytrakul S., Vongsangnak W., Tesena P. | 2024 | Scientific Reports,
14(1), 30842 | 1 |
| 103 | Quantitative Proteomics Analysis Reveals XDH Related with Ovarian Oxidative Stress Involved in Broodiness of Geese | Zhou N., Zhou N., Zhang Y., Zhang Y., Jiang Y., Jiang Y., Gu W., Gu W., Zhao S., Vongsangnak W., Zhang Y., Zhang Y., Xu Q., Xu Q., Zhang Y., Zhang Y. | 2025 | Animals,
15(2), 182 | 1 |
| 104 | Exploring the functional diversity and metabolic activities of the human gut microbiome in Thai adults in response to a prebiotic diet | Kingkaw A., Patumcharoenpol P., Suratannon N., Nakphaichit M., Roytrakul S., Vongsangnak W. | 2025 | Microbiology Spectrum,
13(2) | 1 |
| 105 | Comparative Transcriptomic Responses Directed Towards Reporter Metabolic Routes of Mucor circinelloides WJ11 for Growth Adaptation and Lipid Overproduction | Li F., Li F., Htwe N.M.P.S., Patumcharoenpol P., Yang J., Laoteng K., Song Y., Song Y., Vongsangnak W. | 2025 | Fermentation,
11(2), 61 | 1 |
| 106 | Reconstruction of a Genome-Scale Metabolic Model for Aspergillus oryzae Engineered Strain: A Potent Computational Tool for Enhancing Cordycepin Production | Raethong N., Jeennor S., Anantayanon J., Wannawilai S., Vongsangnak W., Laoteng K. | 2025 | International Journal of Molecular Sciences,
26(14), 6906 | 0 |
| 107 | Probing Wnt pathway and functional signal in equine melanocytic neoplasms through quantitative proteomics and immunohistochemistry | Tesena P., Vinijkumthorn R., Kingkaw A., Yanyongsirikarn P., Phasuk K., Ploypetch S., Phaonakrop N., Roytrakul S., Vongsangnak W., Prapaiwan N. | 2025 | BMC Veterinary Research,
21(1), 509 | 0 |
| 108 | Modeling diet-gut microbiome interactions and prebiotic responses in Thai adults | Raethong N., Patumcharoenpol P., Patumcharoenpol P., Vongsangnak W. | 2026 | Npj Biofilms and Microbiomes,
12(1), 59 | 0 |
| 109 | Integrated Growth Physiology and Transcriptome Profiling Uncover Probiotic Adaptability of Limosilactobacillus fermentum KUB-D18 | He Y., Junyakul S., Raethong N., Nakphaichit M., Mussatto S.I., Vongsangnak W. | 2026 | Fermentation,
12(3), 168 | 0 |
| 110 | Integrative Phosphoproteomic Profiling Reveals Stage-Specific Signalling and Metabolism in Equine Melanocytic Neoplasm | Srimontri P., Kingkaw A., Prapaiwan N., Sujittosakul R., Iamkaewprasert N., Piputwat J., Isama-al P., Munkongdee T., Chotikaprakal T., Yanyongsirikarn P., Phaonakrop N., Roytrakul S., Vongsangnak W., Tesena P. | 2026 | Veterinary and Comparative Oncology | 0 |
| 111 | Engineering the gut microbiome and its impact on human health | Kingkaw A., Mok K., Nakphaichit M., Koffas M., Koffas M., Vongsangnak W. | 2026 | Current Opinion in Biotechnology,
97, 103415 | 0 |
| 112 | Lipid Metabolism in Fungal Growth and Development | Antimanon S., Wannawilai S., Vorapreeda T., Vongsangnak W., Laoteng K. | 2023 | Fungal Lipid Biochemistry,
pp. 309-338 | 0 |
| 113 | Preface to selected papers from the 6th International Conference on Computational Systems-Biology and Bioinformatics (CSBio2015) | Kittichotirat W., Engchuan W., Vongsangnak W., Meechai A. | 2016 | Journal of Bioinformatics and Computational Biology,
14(1), 1602001 | 0 |
| 114 | In silico analysis of plant and animal transposable elements | Huang M.L., Wattanachaisaereekul S., Han Y.J., Vongsangnak W. | 2014 | International Journal of Bioinformatics Research and Applications,
10(3), pp. 297-306 | 0 |